A proposed framework for the description of plant metabolomics experiments and their results


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dc.contributor.author Jenkins, Helen Ann
dc.contributor.author Hardy, Nigel William
dc.contributor.author Beckmann, Manfred
dc.contributor.author Draper, John
dc.contributor.author Smith, Aileen Roberta
dc.contributor.author Taylor, Janet
dc.contributor.author Fiehn, Oliver
dc.contributor.author Goodacre, Royston
dc.contributor.author Bino, Raoul J.
dc.contributor.author Hall, Robert D.
dc.contributor.author Kopka, Joachim
dc.contributor.author Lane, Geoffrey A
dc.contributor.author Lange, Markus
dc.contributor.author Liu, Jang R
dc.contributor.author Mendes, Pedro
dc.contributor.author Nikolau, Basil J
dc.contributor.author Oliver, Stephen G.
dc.contributor.author Paton, Norman W.
dc.contributor.author Rhee, Sue
dc.contributor.author Roessner-Tunali, Ute
dc.contributor.author Saito, Kazuki
dc.contributor.author Smedsgaard, Jørn
dc.contributor.author Sumner, Lloyd W.
dc.contributor.author Wang, Trevor
dc.contributor.author Walsh, Sean
dc.contributor.author Wurtele, Eve Syrkin
dc.contributor.author Kell, Douglas B.
dc.date.accessioned 2009-10-21T15:51:31Z
dc.date.available 2009-10-21T15:51:31Z
dc.date.issued 2004-12-06
dc.identifier.citation Jenkins , H A , Hardy , N W , Beckmann , M , Draper , J , Smith , A R , Taylor , J , Fiehn , O , Goodacre , R , Bino , R J , Hall , R D , Kopka , J , Lane , G A , Lange , M , Liu , J R , Mendes , P , Nikolau , B J , Oliver , S G , Paton , N W , Rhee , S , Roessner-Tunali , U , Saito , K , Smedsgaard , J , Sumner , L W , Wang , T , Walsh , S , Wurtele , E S & Kell , D B 2004 , ' A proposed framework for the description of plant metabolomics experiments and their results ' Nature Biotechnology , vol 22 , no. 12 , pp. 1601-1606 . , 10.1038/nbt1041 en
dc.identifier.issn 1087-0156
dc.identifier.other PURE: 122721
dc.identifier.other dspace: 2160/3274
dc.identifier.uri http://hdl.handle.net/2160/3274
dc.description Jenkins, H., Hardy, N., Beckmann, M., Draper, J., Smith, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R., Kopka, J., Lane, G. A., Lange, B. M., Liu, J. R., Mendes, P., Nikolau, B. J., Oliver, S. G., Paton, N. W., Rhee, S., Roessner-Tunali, U., Saito, K., Smedsgaard, J., Sumner, L. W., Wang, T., Walsh, S., Wurtele, E. S., Kell, D. B. (2004). A proposed framework for the description of plant metabolomics experiments and their results.  Nature Biotechnology, 22 (12), 1601-1606 Sponsorship: United Kingdom Food Standards Agency (under the G02006 project), the United Kingdom Biotechnology and Biological Sciences Research Council (particularly under the HiMet project) and the United Kingdom Engineering and Physical Sciences Research Council for support of their work in metabolomics. en
dc.description.abstract The study of the metabolite complement of biological samples, known as metabolomics, is creating large amounts of data, and support for handling these data sets is required to facilitate meaningful analyses that will answer biological questions. We present a data model for plant metabolomics known as ArMet (architecture for metabolomics). It encompasses the entire experimental time line from experiment definition and description of biological source material, through sample growth and preparation to the results of chemical analysis. Such formal data descriptions, which specify the full experimental context, enable principled comparison of data sets, allow proper interpretation of experimental results, permit the repetition of experiments and provide a basis for the design of systems for data storage and transmission. The current design and example implementations are freely available (http://www.armet.org/). We seek to advance discussion and community adoption of a standard for metabolomics, which would promote principled collection, storage and transmission of experiment data. en
dc.format.extent 6 en
dc.language.iso eng
dc.relation.ispartof Nature Biotechnology en
dc.title A proposed framework for the description of plant metabolomics experiments and their results en
dc.type Text en
dc.type.publicationtype Article (Journal) en
dc.identifier.doi http://dx.doi.org/10.1038/nbt1041
dc.contributor.institution Department of Computer Science en
dc.contributor.institution Institute of Biological, Environmental and Rural Sciences en
dc.description.status Peer reviewed en

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