BAC-HAPPY mapping (BAP mapping): a new and efficient protocol for physical mapping

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dc.contributor.author Wilkinson, Michael J.
dc.contributor.author Caligari, Peter D. S.
dc.contributor.author Dear, P. H.
dc.contributor.author Vu, Giang T. H.
dc.date.accessioned 2011-06-01T07:43:51Z
dc.date.available 2011-06-01T07:43:51Z
dc.date.issued 2010-02-08
dc.identifier.citation Wilkinson , M J , Caligari , P D S , Dear , P H & Vu , G T H 2010 , ' BAC-HAPPY mapping (BAP mapping): a new and efficient protocol for physical mapping ' PLoS One , vol 5 , no. 2 , pp. paper e9089 . , 10.1371/journal.pone.0009089 , 10.1371/journal.pone.0009089 en
dc.identifier.issn 1932-6203
dc.identifier.other PURE: 162664
dc.identifier.other dspace: 2160/6848
dc.identifier.uri http://hdl.handle.net/2160/6848
dc.description Vu, G.T.H., Dear, P.H., Caligari, P.D.S., Wilkinson, M.J.* (2010). BAC-HAPPY mapping (BAP mapping): a new and efficient protocol for physical mapping.  PLoS One, 5, (2), paper e9089. IMPF: 03.56 Sponsorship: Biohybrids International and Sumatra Biosciences en
dc.description.abstract Physical and linkage mapping underpin efforts to sequence and characterize the genomes of eukaryotic organisms by providing a skeleton framework for whole genome assembly. Hitherto, linkage and physical 'contig' maps were generated independently prior to merging. Here, we develop a new and easy method, BAC HAPPY MAPPING (BAP mapping), that utilizes BAC library pools as a HAPPY mapping panel together with an Mbp-sized DNA panel to integrate the linkage and physical mapping efforts into one pipeline. Using Arabidopsis thaliana as an exemplar, a set of 40 Sequence Tagged Site (STS) markers spanning ~10% of chromosome 4 were simultaneously assembled onto a BAP map compiled using both a series of BAC pools each comprising 0.7x genome coverage and dilute (0.7x genome) samples of sheared genomic DNA. The resultant BAP map overcomes the need for polymorphic loci to separate genetic loci by recombination and allows physical mapping in segments of suppressed recombination that are difficult to analyze using traditional mapping techniques. Even virtual 'BAC-HAPPY-mapping' to convert BAC landing data into BAC linkage contigs is possible. en
dc.language.iso eng
dc.relation.ispartof PLoS One en
dc.title BAC-HAPPY mapping (BAP mapping): a new and efficient protocol for physical mapping en
dc.type Text en
dc.type.publicationtype Article (Journal) en
dc.identifier.doi http://dx.doi.org/10.1371/journal.pone.0009089
dc.contributor.institution Institute of Biological, Environmental and Rural Sciences en
dc.description.status Peer reviewed en


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